PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017971-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 127aa    MW: 13942.8 Da    PI: 4.5035
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017971-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-07855346
                     SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46
                      W+ e+++ +  a+ ++        +W+ Ia++++  +t  ++k ++  
    NNU_017971-RA  8 GWSREDEKAFETAIVMHWATndskdRWENIASMVP-SKTVAELKKHYEV 55
                     6****************9999**************.**********965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.415161IPR017884SANT domain
SMARTSM007172.1E-5559IPR001005SANT/Myb domain
PfamPF002491.7E-5754IPR001005SANT/Myb domain
SuperFamilySSF466897.34E-10864IPR009057Homeodomain-like
CDDcd001675.56E-8957No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MNMASVGGWS REDEKAFETA IVMHWATNDS KDRWENIASM VPSKTVAELK KHYEVLVEDV  60
DAIELGQIPI PTYVKEEVAS SKDQLLFLVF ASGAVDKRLN CNFGTRFSGL GTDSGGVDIG  120
LNSCEVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-17373173RADIALIS
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271092.13e-69PREDICTED: protein RADIALIS-like 4
TrEMBLV5T6Q51e-36V5T6Q5_ARAHY; Putative MYB-related protein 28
STRINGPOPTR_0012s05720.19e-36(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-22MYB family protein